Bioinformaticians not only make sure that the raw data to be delivered is of high quality (e.g., Q30, yield, etc), but also that sequences are biologically relevant by checking the absence of contamination and, depending on the specific application, by checking the results of the primary analysis (e.g. duplicate rates, GC-content, etc).

BMC Bioinformatics 14 Suppl 15 (-) S12 [2013-10-15; online 2013-10-15] Affiliated researcher PubMed DOI Crossref. Genome-wide probabilistic reconciliation analysis

Hold ctrl or shift (or drag with the mouse) to select more than one. SciLife Bioinformatics: long-term support - WABI . Wallenberg Advanced Bioinformatics Infrastructure . Originally KAW infrastructure . 15 employees in Uppsala - Stockholm . 6 months support free of charge .

Scilife bioinformatics

By combining research Functional biology. 17. Systems biology & bioinformatics. 18. jean.hausser@scilifelab.se consultant (bioengineering / bioinformatics) The lab is located at Karolinska Institutet and SciLifeLab in Stockholm, Sweden.

The Swedish Bioinformatics Advisory Program PhD students get a senior bioinformatician as a personal advisor during 2 years of their PhD. Monthly project meetings + two grand meetings per year to aid networking and knowledge transfer. www.scilifelab.se/education/mentorship/the-swedish-bioinformatics-advisory-program/

Stockholm, Stockholm, SverigeFler än Professor of Bioinformatics DBB, Stockholm University Science for Life Laboratory ORCID: 0000-0002-9015-5588. Email: Erik.Sonnhammer at scilifelab.se scilifelab-lts/nbis-meta. SciLifeLab Bioinformatics LTS. /. Bioinformatics LTS. nbis- meta.

The National Genomics Infrastructure, NGI, at SciLifeLab is responsible for sequencing a large number of projects for users across Sweden. A new tool, published in Bioinformatics by Phil Ewels and colleagues at the NGI, allows the facility and users to summarize analysis results for an entire

Place: Uppsala. PhD students from all Swedish universities are I'm a PhD student in the Lundeberg Lab, situated at SciLifeLab (Stockholm, Sweden), where I focus on Bioinformatics (BB2441), assistant | Course web Suparna Sanyal, will employ shotgun sequencing (at Sci-life Lab) and bioinformatics to identify species- and strain-specific biomarkers. DNA microchips will be av S Lampa · 2013 · Citerat av 64 — bioinformatics has emerged as a key discipline to manage and analyze this and the national sequencing platforms within SciLife-. Lab, which oxygen gradient through the water into the sediment is investigated (applying direct metagenomic sequencing at Sci Life, bioinformatics, metadata analysis Föreläsare: Per Sikora, Head of Bioinformatics at Sahlgrenska University facility Clinical Genomics Gothenburg at SciLife labs and Chair of Informatics and 16 lediga jobb som Scilifelab i Stockholm på Indeed.com.

Erik Sonnhammer, Claudia Kutter and other participants in the projects. The project aims to generate […] På svenska - SciLifeLab. Ett nationellt forskningscenter för molekylära biovetenskaper. På SciLifeLab kretsar verksamheten kring life science – livsvetenskap ett globalt viktigt och välinvesterat forskningsfält som gör skillnad inom områden som hälsa, miljö och klimat, jord- och skogsbruk samt bioenergi. Men vi har tagit ett nytt grepp. SciLifeLab Bioinformatics (NBIS) and Genomics (NGI) were both top-ranked in the recent VR evaluation (September 2017).
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A new tool, published in Bioinformatics by Phil Ewels and colleagues at the NGI, allows the facility and users to summarize analysis results for an entire Filter publications based on the assigned labels. This filter is not applied if none are selected.

Paco Cárdenas (Pharmacognosy) has been awarded SciLifeLab Bioinformatics Long-term Support (WABI) by the National Bioinformatics samuel.flores@scilifelab.se You are invited to apply to MedBioInfo, the National Graduate School in Medical Bioinformatics, established to provide advanced Bioinformatics Platform, Systems Biology Facility at SciLifeLab (Science for Life Laboratory). SciLifeLab (Science for Life Laboratory)Stockholms universitet.
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Introduction to Bioinformatics Using NGS Data. Held in Uppsala February 04 - 08, 2019. Important Links. Pre-course material Schedule. Helpful Things. Linux cheat sheet Bash cheat sheet level1 Bash cheat sheet level2 Bash cheat sheet level3 UPPMAX cheat sheet Mac keyboard layout. External Resources. IGV (Integrative Genomics Viewer) Home

In the past 3 years, GAPS has brought together research groups from across Sweden who study the genetic basis of common diseases. SECAPR—a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments Andermann T, Cano Á, Zizka A, Bacon C, Antonelli A SRA: SRP131660 Zenodo: 10.5281/zenodo.1162653. PeerJ 6 (-) e5175 [2018-07-13; online 2018-07-13] BMC Bioinformatics 17 (Suppl 14) 431 [2016-11-11; online 2016-11-11] Affiliated researcher.

RNA and DNA Quality Control · Data Analysis; Links: SciLife Lab Stockholm · Tools of Science · Bioinformatics Infrastructure for Life Sciences(BILS). ©

2015 February - Uppsala 2015 May - Gothenburg 2015 September - Uppsala 2015 November - Lund 2016 January - Uppsala 2016 April - Linköping 2016 September - Uppsala 2016 November - Umeå 2017 January - Uppsala 2017 May - Gothenburg 2017 September - Lund 2017 November - Uppsala 2018 February - Uppsala A curated list of useful and actively maintained projects at SciLifeLab. You can find code ranging from simple bioinformatics resources and general programming tools right through to … Runs with illumina total RNA-sequencing data. Aligns to the reference genome, gives QC metrics and finishes with gene count matrices. RNA-Seq is a bioinformatics analysis pipeline used for RNA sequencing data. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. Bioinformatics Long-term support (WABI) offers a senior bioinformatician to work in your project for up to 500 hours.

Arne Elofsson. Professor in Bioinformatics 08-16 10 19 arne.elofsson@dbb.su.se Apply to one of the open positions at SciLifeLab! Currently open positions at: Karolinska Institutet, KTH Royal Institute of Technology, Stockholm University and SciLifeLab workshop · 1. Methods!